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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011972.1_4775_6194_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4775 - 6194
Intron Length:
1420

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGGGTG
5'SS Class:
strong_major
3'SS Sequence:
TCTATTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GTGAATTTAATA
Flanking Amino Acid:
HGIDERDKAQRTPLHLACAN
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
68.2
43
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
85.5
0.8
0.7
84.7
30.1
Minor 5ss
33.3
-1.9
3.7
47.2
48.2
Minor BPS
54.8
0.15
1.5
61.68
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023299
Chromosome:
PEDO01011972.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030743
4554 - 7524
2971