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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011972.1_6695_6805_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6695 - 6805
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTGCCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
AGATTTTTAACT
Flanking Amino Acid:
HNAHIDAQNKEGYTPLILAV
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
90.3
22.3
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
81
0.7
0.8
77.3
31.5
Minor 5ss
45.5
-0.5
3
66.9
44.4
Minor BPS
72.7
0.79
1.1
79.64
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023299
Chromosome:
PEDO01011972.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030743
4554 - 7524
2971