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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011988.1_483_637_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
483 - 637
Intron Length:
155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTACGGGGC
5'SS Class:
major
3'SS Sequence:
CCCCGCCCAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGGTGAT
U12 Branch Point Sequence:
TTTGGGTGATCT
Flanking Amino Acid:
LTLSREFLHYDPSNQRVTRN
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.1
56.6
42.5
Major BPS
49.3
-0
1.5
42.8
49.4
Major PPT
60.9
0.25
0.9
54.5
29.3
Minor 5ss
29
-2.4
3.7
40.8
45.9
Minor BPS
41
-0.6
2.6
68.24
48.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006361
Chromosome:
PEDO01011988.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006596
21 - 3449
3429