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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012008.1_1036_1122_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1036 - 1122
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGAGCC
5'SS Class:
major
3'SS Sequence:
CCTCCTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCCCAC
U12 Branch Point Sequence:
CCCACCCCACCA
Flanking Amino Acid:
NGPLPGPGPYKVKFLALNGT
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
65.8
31.9
Major BPS
46.4
-0.2
1.2
52.1
34.1
Major PPT
73.8
0.54
0.7
65
30.6
Minor 5ss
28
-2.5
3.2
34.4
35
Minor BPS
39.5
-0.8
2
44.52
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022798
Chromosome:
PEDO01012008.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028820
21 - 2676
2656