Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012012.1_1721_2131_R

Intron Information:

Intron Rank:

134967

Intron Class:

major

Intron Phase:

Intron Coordinates:

1721 - 2131

Intron Length:

411

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGAGTTTG

5'SS Class:

strong_major

3'SS Sequence:

CCACCGCCTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CATTTAC

U12 Branch Point Sequence:

CTCTCCTCCACC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.8

0.77

0.9

74.8

38.1

Major BPS

66.4

0.41

37.6

Major PPT

65.9

0.36

0.9

57.6

Minor 5ss

37.9

-1.4

2.9

40.9

45.3

Minor BPS

53.5

0.09

2.1

66.26

45.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019964

Chromosome:

PEDO01012012.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019150

1371 - 2942

1572

ENSAPLT00000036077

1371 - 2942

1572