Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012035.1_5674_6563_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5674 - 6563

Intron Length:

890

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAGGTGCC

5'SS Class:

major

3'SS Sequence:

CCACTCTGCACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCCCAT

U12 Branch Point Sequence:

CTGTCCCCACTC

Flanking Amino Acid:

GVFLLNSNAMEVALQPAPAL

Intron Amino Acid Position:

263

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.5

0.6

1.1

68.7

37.6

Major BPS

59.7

0.24

1.3

68.6

38.9

Major PPT

65.5

0.35

0.9

59.7

35.3

Minor 5ss

32.1

-2

3.3

35.7

41.2

Minor BPS

43.9

-0.4

2.1

54.82

43.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015135

Chromosome:

PEDO01012035.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047524

2747 - 11733

8987

ENSAPLT00000015783

3299 - 11733

8435