Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012035.1_9485_9804_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9485 - 9804

Intron Length:

320

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACCCAAG

5'SS Class:

major

3'SS Sequence:

CGTTGCCTTCCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTCAC

U12 Branch Point Sequence:

CCTGTCCCATGT

Flanking Amino Acid:

YGLMEAEATASALIQIRGKR

Intron Amino Acid Position:

529

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.3

0.38

1.3

59.9

46.4

Major BPS

72.7

0.56

30.1

Major PPT

76.1

0.59

0.9

65.7

Minor 5ss

43.2

-0.7

47.3

Minor BPS

34.9

-1

2.1

47.42

45.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015135

Chromosome:

PEDO01012035.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047524

2747 - 11733

8987

ENSAPLT00000015783

3299 - 11733

8435