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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012040.1_171440_175434_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
171440 - 175434
Intron Length:
3995

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTATGATCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATGATCT
Flanking Amino Acid:
WQHSMFLDFLKRQGACLPHV
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.5
27.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
72.8
0.51
0.9
70.7
39.7
Minor 5ss
37.7
-1.4
2.7
44.2
37
Minor BPS
54.8
0.23
2
81.89
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008241
Chromosome:
PEDO01012040.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025501
166818 - 188584
21767