Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012040.1_176304_180277_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

176304 - 180277

Intron Length:

3974

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAATTGT

5'SS Class:

strong_major

3'SS Sequence:

TTTCTAATTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTGTTTTTAAAA

Flanking Amino Acid:

WTDVLLQVYKVFVLPRVSLR

Intron Amino Acid Position:

239

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.87

0.9

81.2

33.8

Major BPS

96.5

1.15

0.6

34.2

Major PPT

85.1

0.79

0.8

82.5

32.7

Minor 5ss

41.3

-1

58.7

45.8

Minor BPS

70.1

0.63

1.3

75.76

35.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008241

Chromosome:

PEDO01012040.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025501

166818 - 188584

21767