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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012040.1_50061_50524_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
50061 - 50524
Intron Length:
464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTGTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
TCTATCTAAATC
Flanking Amino Acid:
HAVNLTIDIKVCSTLKSVPL
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
83.8
27.2
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
77.1
0.61
0.9
69
41.8
Minor 5ss
33.7
-1.9
3.4
48.7
47.5
Minor BPS
56.7
0.19
1.7
65.99
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017102
Chromosome:
PEDO01012040.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022227
49508 - 63101
13594