Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012040.1_62224_62840_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

62224 - 62840

Intron Length:

617

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGTTTTT

5'SS Class:

major

3'SS Sequence:

CCTTTACTTGGAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAC

U12 Branch Point Sequence:

TTTCCTTTACTT

Flanking Amino Acid:

RWIEVQTRLKARMTELKKGD

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.68

80.7

34.7

Major BPS

81.9

0.79

0.8

81.9

Major PPT

61.1

0.25

1.7

69.5

35.8

Minor 5ss

44.8

-0.6

3.2

66.9

44.3

Minor BPS

68.3

0.65

1.6

84.98

35.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017102

Chromosome:

PEDO01012040.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022227

49508 - 63101

13594