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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012040.1_62935_67083_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62935 - 67083
Intron Length:
4149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTATGATCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATGATCT
Flanking Amino Acid:
WQHSMFLDFLKRQGACLPHV
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.5
27.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
72.8
0.51
0.9
70.7
39.7
Minor 5ss
37.7
-1.4
2.7
44.2
37
Minor BPS
54.8
0.23
2
81.89
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017102
Chromosome:
PEDO01012040.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008547
47952 - 71711
23760