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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012061.1_633_1151_F

Intron Information:

Intron Rank:
126940
Intron Class:
major
Intron Phase:
Intron Coordinates:
633 - 1151
Intron Length:
519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGACAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGCCCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
AGGTCTTGATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.8
76.8
33.7
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
70.2
0.45
1
68.5
37.7
Minor 5ss
28.2
-2.5
3.1
38.3
46.6
Minor BPS
49.2
-0
1.7
58.36
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018396
Chromosome:
PEDO01012061.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046097
21 - 1622
1602