Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012100.1_2256_7529_R

Intron Information:

Intron Rank:

139619

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

2256 - 7529

Intron Length:

5274

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTGTGGGGG

5'SS Class:

major

3'SS Sequence:

CTGTGCTGGGGAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GGGGTAG

U12 Branch Point Sequence:

TCGGGGGTAGGG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.9

0.35

1.1

47.4

42.9

Major BPS

30.1

-1.2

1.5

14.6

34.8

Major PPT

45.7

-0.2

1.8

49.7

43.9

Minor 5ss

28.8

-2.4

3.4

28.2

Minor BPS

24.1

-2.1

2.5

25.45

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022583

Chromosome:

PEDO01012100.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036679

1264 - 9068

7805