Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012103.1_2155_2488_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

2155 - 2488

Intron Length:

334

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CTG|GCCATCATC

5'SS Class:

weak_major

3'SS Sequence:

CAAGGCGGACAAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGAAGAC

U12 Branch Point Sequence:

AGGCGCGCAAGG

Flanking Amino Acid:

YPTKGEKIMLSRPGGSLLEA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.19

1.3

65.7

42.5

Major BPS

-0.1

1.2

40.8

39.7

Major PPT

42.6

-0.4

1.1

26.8

35.7

Minor 5ss

29.2

-2.4

3.9

40.9

39.5

Minor BPS

31.8

-1.5

2.3

31.93

40.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026360

Chromosome:

PEDO01012103.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028512

101 - 2524

2424