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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012108.1_10215_11819_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10215 - 11819
Intron Length:
1605

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTCTCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
ATTCTATGAATT
Flanking Amino Acid:
MATPRAEALFDFSGTNK
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.7
1.08
0.6
96
12.4
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
73.7
0.53
0.8
69
31.7
Minor 5ss
36.2
-1.6
2.9
50.6
45.9
Minor BPS
53.1
0.17
1.7
73.98
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002281
Chromosome:
PEDO01012108.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036222
7429 - 12359
4931