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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012112.1_48901_54625_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

48901 - 54625

Intron Length:

5725

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACAGCTA

5'SS Class:

major

3'SS Sequence:

CACCCTGCTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCTTCAC

U12 Branch Point Sequence:

TTCTCCTTCAGT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.8

0.49

1.1

63.1

42.9

Major BPS

65.1

0.38

1.1

68.9

36.5

Major PPT

64.1

0.32

0.9

57.6

32.9

Minor 5ss

32.6

-2

3.7

47.1

48.3

Minor BPS

63.8

0.51

2.1

83.36

Associated Gene:

Gene:

BBOX1

Ensembl Gene ID:

ENSAPLG00000002936

Chromosome:

PEDO01012112.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002993

48598 - 84234

35637