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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012112.1_55017_56676_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
55017 - 56676
Intron Length:
1660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTCGGA
5'SS Class:
major
3'SS Sequence:
TTTATTCTTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTCTAAAAT
Flanking Amino Acid:
KEVTLTDRKKISITWPDEHT
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68
0.43
1.1
56.3
43
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
79.3
0.66
1
83.7
31.6
Minor 5ss
34.7
-1.7
3.5
47.8
47.7
Minor BPS
69.5
0.69
1.7
88.72
36.1

Associated Gene:

Gene:
BBOX1
Ensembl Gene ID:
ENSAPLG00000002936
Chromosome:
PEDO01012112.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002993
48598 - 84234
35637