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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012112.1_56792_72151_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56792 - 72151
Intron Length:
15360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCTAT
U12 Branch Point Sequence:
CCTTCTCTATTT
Flanking Amino Acid:
AEMREDLFLPERQYWGSDLQ
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
78.9
35.3
Major BPS
61.2
0.28
1.4
60.7
45.4
Major PPT
85.7
0.8
0.7
77.3
31.5
Minor 5ss
35
-1.7
3.8
55.2
49
Minor BPS
48.9
-0
1.9
67.66
44.1

Associated Gene:

Gene:
BBOX1
Ensembl Gene ID:
ENSAPLG00000002936
Chromosome:
PEDO01012112.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002993
48598 - 84234
35637