About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012112.1_82159_84011_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82159 - 84011
Intron Length:
1853

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGGAAG
5'SS Class:
major
3'SS Sequence:
CATCTCTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
CATCTCTTCACA
Flanking Amino Acid:
EHKFTYKLKPGDIVTFDNWR
Intron Amino Acid Position:
381

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1.3
69.6
42.7
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
78
0.63
0.8
71.8
32.3
Minor 5ss
27
-2.6
2.9
30.6
42.9
Minor BPS
55.5
0.17
1.8
65.38
41

Associated Gene:

Gene:
BBOX1
Ensembl Gene ID:
ENSAPLG00000002936
Chromosome:
PEDO01012112.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002993
48598 - 84234
35637