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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012125.1_6781_6887_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6781 - 6887
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CCTCGCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
GCACACTGACGT
Flanking Amino Acid:
DFLESLSKTAWYVVFLVWTP
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71.1
32.7
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
68.5
0.42
0.8
60.6
29.5
Minor 5ss
28.6
-2.4
3
32.8
35.9
Minor BPS
38.7
-0.7
1.9
49.09
43.3

Associated Gene:

Gene:
FA2H
Ensembl Gene ID:
ENSAPLG00000016118
Chromosome:
PEDO01012125.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016812
3108 - 7330
4223