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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012187.1_1174_1291_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1174 - 1291
Intron Length:
118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGGACG
5'SS Class:
major
3'SS Sequence:
CCCTCTCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAT
U12 Branch Point Sequence:
GTGTCCCCAGGC
Flanking Amino Acid:
LDAAMKDELENGWINFEKRR
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
63.1
43
Major BPS
58.4
0.21
1.4
51.1
46.3
Major PPT
78.6
0.64
0.7
72.5
25.7
Minor 5ss
25.7
-2.8
3.1
30.8
42.9
Minor BPS
40.8
-0.7
2.2
52.32
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024788
Chromosome:
PEDO01012187.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032225
21 - 2152
2132