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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012222.1_14557_15283_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14557 - 15283
Intron Length:
727

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATCCAT
U12 Branch Point Sequence:
TCCCTAGTGACT
Flanking Amino Acid:
LMPGKLSYQSSGSRANTGHI
Intron Amino Acid Position:
541

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.5
36.8
Major BPS
69.5
0.49
1.2
78.7
34.9
Major PPT
83.3
0.75
0.7
77.6
24.3
Minor 5ss
38.5
-1.3
3.4
55.9
48.3
Minor BPS
43.1
-0.4
2.2
60.82
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025874
Chromosome:
PEDO01012222.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029810
13623 - 25218
11596