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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012237.1_26104_28184_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26104 - 28184
Intron Length:
2081

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAATAA
5'SS Class:
major
3'SS Sequence:
TTATTTCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTTTTGTTACTT
Flanking Amino Acid:
APPSPGQLKHVFFHNALPFV
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
69
31.3
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
86.3
0.82
0.7
85.7
28.7
Minor 5ss
36.7
-1.5
3.1
43.7
45.9
Minor BPS
56.2
0.27
2.3
82.74
39.5

Associated Gene:

Gene:
TMEM65
Ensembl Gene ID:
ENSAPLG00000029016
Chromosome:
PEDO01012237.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043695
5400 - 35406
30007
ENSAPLT00000043402
5400 - 35382
29983
ENSAPLT00000028665
5400 - 35406
30007