Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012237.1_5782_26058_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5782 - 26058

Intron Length:

20277

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGCCCC

5'SS Class:

strong_major

3'SS Sequence:

TTGACTTCTCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAC

U12 Branch Point Sequence:

TTCATTTTGACT

Flanking Amino Acid:

HRFESIAIAQEKLEVAPPSP

Intron Amino Acid Position:

128

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.8

0.77

0.9

65.8

40.2

Major BPS

86.5

0.91

0.8

77.4

37.4

Major PPT

74.4

0.55

0.9

66.5

40.5

Minor 5ss

33.7

-1.9

42.6

44.4

Minor BPS

66.1

0.59

1.3

78.85

37.8

Associated Gene:

Gene:

TMEM65

Ensembl Gene ID:

ENSAPLG00000029016

Chromosome:

PEDO01012237.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043695

5400 - 35406

30007