About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012237.1_5782_8509_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5782 - 8509
Intron Length:
2728

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
TGTGCCCTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TCTTCCTTCACT
Flanking Amino Acid:
HRFESIAIAQDPITARGSCQ
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
69
0.43
1
62.6
38.5
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
78.4
0.98
1.7
91.67
38.1

Associated Gene:

Gene:
TMEM65
Ensembl Gene ID:
ENSAPLG00000029016
Chromosome:
PEDO01012237.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043402
5400 - 35382
29983