About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012238.1_159379_160230_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
159379 - 160230
Intron Length:
852

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGCCT
5'SS Class:
major
3'SS Sequence:
CCCCCCCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
CCCCTCTCATGC
Flanking Amino Acid:
SIFQSETQELLDVVIADLDG
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
64.8
40.7
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
72.2
0.5
0.7
64.9
23.7
Minor 5ss
28.1
-2.5
3.3
36.8
41.4
Minor BPS
38.5
-0.8
1.9
38.59
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029465
Chromosome:
PEDO01012238.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017547
153395 - 171950
18556