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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012238.1_167087_167229_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
167087 - 167229
Intron Length:
143

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CGC|GCAGGTACC
5'SS Class:
weak_major
3'SS Sequence:
AGAGCCACCCCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GGCTGAT
U12 Branch Point Sequence:
GTCTCCGCAGCC
Flanking Amino Acid:
CFTFWEAVESANGEEEEESS
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51
0.03
2
70.2
38.5
Major BPS
58.4
0.21
1.4
51.1
46.3
Major PPT
53
0.07
1
41
38.6
Minor 5ss
26.2
-2.7
3.8
32.7
34.8
Minor BPS
44.5
-0.4
2.3
59.35
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029465
Chromosome:
PEDO01012238.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017547
153395 - 171950
18556