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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012238.1_167364_171908_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
167364 - 171908
Intron Length:
4545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CGGTGCTCACCC
Flanking Amino Acid:
DNPFPQGIELFCQPSGWQLF
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
74
36.6
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
85.4
0.8
0.7
80.1
25.2
Minor 5ss
31
-2.2
3.2
37
41.8
Minor BPS
43
-0.5
2.2
50.79
46

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029465
Chromosome:
PEDO01012238.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017547
153395 - 171950
18556