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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012238.1_25349_25509_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25349 - 25509
Intron Length:
161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
TCCCTCCTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTGCAT
U12 Branch Point Sequence:
TCTTCCTTCCCT
Flanking Amino Acid:
EREQTHRAVFRFIPRHEDEL
Intron Amino Acid Position:
894

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
38.7
Major BPS
59.8
0.25
1.5
71.4
45.1
Major PPT
77.6
0.62
0.7
72.2
25.8
Minor 5ss
35.7
-1.6
3
48.8
47
Minor BPS
47.4
-0.1
3.6
83.33
44.1

Associated Gene:

Gene:
MAPK8IP2
Ensembl Gene ID:
ENSAPLG00000016794
Chromosome:
PEDO01012238.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039422
22813 - 30744
7932
ENSAPLT00000036782
23991 - 30744
6754
ENSAPLT00000022979
22813 - 32715
9903
ENSAPLT00000022818
22813 - 31962
9150