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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012238.1_80147_82019_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80147 - 82019
Intron Length:
1873

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGGGG
5'SS Class:
major
3'SS Sequence:
GCTCTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTCAC
U12 Branch Point Sequence:
GCCCCGCTCACT
Flanking Amino Acid:
MHLAYLSLYQVGQVFLYFQW
Intron Amino Acid Position:
524

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
60.6
44.2
Major BPS
57.5
0.19
1.1
60.7
37.6
Major PPT
72.3
0.5
0.8
65.6
30.3
Minor 5ss
28.7
-2.4
3.5
38.3
46.7
Minor BPS
38.9
-0.7
2.5
54.45
46.8

Associated Gene:

Gene:
LMF2
Ensembl Gene ID:
ENSAPLG00000030707
Chromosome:
PEDO01012238.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027296
78479 - 85836
7358
ENSAPLT00000019887
78479 - 85836
7358
ENSAPLT00000019600
78479 - 85836
7358