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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012238.1_83603_83772_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
83603 - 83772
Intron Length:
170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CCACCCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAG
U12 Branch Point Sequence:
CGGGTCTGAGCC
Flanking Amino Acid:
LSWEILCALYRCISVRGCFW
Intron Amino Acid Position:
785

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
69.7
35.1
Major BPS
49.8
-0
1.7
51.1
46.3
Major PPT
64.8
0.33
0.8
57
26.9
Minor 5ss
29
-2.4
3.1
36.8
40.4
Minor BPS
43.8
-0.4
1.7
47.12
42.3

Associated Gene:

Gene:
LMF2
Ensembl Gene ID:
ENSAPLG00000030707
Chromosome:
PEDO01012238.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027296
78479 - 85836
7358
ENSAPLT00000019887
78479 - 85836
7358
ENSAPLT00000019600
78479 - 85836
7358