Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012238.1_83870_83995_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

83870 - 83995

Intron Length:

126

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTGAGCTCG

5'SS Class:

major

3'SS Sequence:

TTGCGCTGCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCCCAT

U12 Branch Point Sequence:

GCCTCCTGCAGC

Flanking Amino Acid:

AAVGVFAVSLVPFTYIDYES

Intron Amino Acid Position:

818

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.9

0.61

61.1

40.2

Major BPS

48.9

-0

1.3

39.1

Major PPT

65.9

0.36

57.5

43.2

Minor 5ss

38.9

-1.3

2.9

44.8

44.2

Minor BPS

44.2

-0.4

2.1

51.35

45.6

Associated Gene:

Gene:

LMF2

Ensembl Gene ID:

ENSAPLG00000030707

Chromosome:

PEDO01012238.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027296

78479 - 85836

7358

ENSAPLT00000019887

78479 - 85836

7358

ENSAPLT00000019600

78479 - 85836

7358