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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012238.1_84741_84952_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
84741 - 84952
Intron Length:
212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGATGG
5'SS Class:
major
3'SS Sequence:
CCCTGCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
AGGCACTGATCC
Flanking Amino Acid:
KYWFTGSAETGEGATRWWRR
Intron Amino Acid Position:
972

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
59.4
42.3
Major BPS
71.2
0.53
1
61
37.5
Major PPT
68.2
0.41
0.8
61
29.2
Minor 5ss
31.5
-2.1
3
30.1
42.9
Minor BPS
43.4
-0.5
1.8
49.55
39.8

Associated Gene:

Gene:
LMF2
Ensembl Gene ID:
ENSAPLG00000030707
Chromosome:
PEDO01012238.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027296
78479 - 85836
7358
ENSAPLT00000019887
78479 - 85836
7358
ENSAPLT00000019600
78479 - 85836
7358