Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012238.1_85386_85517_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

85386 - 85517

Intron Length:

132

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGAGG

5'SS Class:

strong_major

3'SS Sequence:

ACCCGTCTTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTAGCAG

U12 Branch Point Sequence:

GCCACCAGGACC

Flanking Amino Acid:

DRGGGEKNGQALADAAGSGP

Intron Amino Acid Position:

1090

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.2

0.81

0.9

69.5

42.7

Major BPS

38.8

-0.7

1.7

45.5

47.5

Major PPT

71.7

0.49

0.9

61.3

39.5

Minor 5ss

26.2

-2.7

2.9

30.6

42.9

Minor BPS

44.1

-0.4

1.8

49.21

40.7

Associated Gene:

Gene:

LMF2

Ensembl Gene ID:

ENSAPLG00000030707

Chromosome:

PEDO01012238.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019600

78479 - 85836

7358