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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012241.1_621_732_R

Intron Information:

Intron Rank:
141938
Intron Class:
major
Intron Phase:
Intron Coordinates:
621 - 732
Intron Length:
112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGATGG
5'SS Class:
major
3'SS Sequence:
TCCTCTATTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTCTAT
U12 Branch Point Sequence:
TCCTCTATTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
61.5
39.8
Major BPS
49.5
-0
1.3
50.1
43.7
Major PPT
82.1
0.72
0.8
76.2
30.9
Minor 5ss
34.3
-1.8
3.1
43
44.3
Minor BPS
49.8
-0
1.9
63.76
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023687
Chromosome:
PEDO01012241.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022411
500 - 1177
678