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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012260.1_117770_121735_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
117770 - 121735
Intron Length:
3966

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
TTTTCTCTAACA
Flanking Amino Acid:
SLVKTVTIILSAFVICWTPG
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
72.6
37.3
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
83.7
0.76
0.7
76.3
32.3
Minor 5ss
37.2
-1.4
2.9
46.5
35.3
Minor BPS
76.4
0.83
1.6
88.12
28.9

Associated Gene:

Gene:
LPAR2
Ensembl Gene ID:
ENSAPLG00000012802
Chromosome:
PEDO01012260.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013322
116179 - 123880
7702