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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012260.1_142317_142422_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
142317 - 142422
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGGGTACC
5'SS Class:
major
3'SS Sequence:
CCTTTCGCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTGAC
U12 Branch Point Sequence:
AGTGACTCAGTT
Flanking Amino Acid:
TGVLKHFLKELSGPVLLYQL
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1
68.6
36.4
Major BPS
54.8
0.12
1.1
46.8
37.9
Major PPT
78.9
0.65
0.8
72.8
32
Minor 5ss
31.9
-2.1
2.9
37.5
33.5
Minor BPS
44.1
-0.3
1.9
60.67
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017811
Chromosome:
PEDO01012260.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028299
141220 - 143244
2025