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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012260.1_142561_142665_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
142561 - 142665
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
CCCCCCAACGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
AATTCCTGATCT
Flanking Amino Acid:
EIEARALGVQGIYRISGSKA
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
83.9
30.3
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
60.5
0.24
0.9
54
28
Minor 5ss
36.5
-1.5
2.9
49.7
46.6
Minor BPS
64.3
0.53
1.7
81.11
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017811
Chromosome:
PEDO01012260.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028299
141220 - 143244
2025