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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012260.1_142855_143127_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
142855 - 143127
Intron Length:
273

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTGCTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCATAAT
U12 Branch Point Sequence:
TAGAGCATAATT
Flanking Amino Acid:
FMVNGFECEECYLACHKKCL
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
33.8
Major BPS
57.5
0.19
1.3
60.2
42.9
Major PPT
84.6
0.78
0.8
76.4
37.6
Minor 5ss
26.4
-2.7
3.5
38.5
46.7
Minor BPS
47.8
-0
2
66.88
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017811
Chromosome:
PEDO01012260.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028299
141220 - 143244
2025