About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012260.1_151480_165188_R

Intron Information:

Intron Rank:
134578
Intron Class:
major
Intron Phase:
Intron Coordinates:
151480 - 165188
Intron Length:
13709

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAATCCA
5'SS Class:
major
3'SS Sequence:
TCTCCAACCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAA
U12 Branch Point Sequence:
TCTTCTCCAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.1
65.3
40.5
Major BPS
55.5
0.14
1.3
66.7
39.7
Major PPT
68.8
0.42
0.9
59.3
35.8
Minor 5ss
34.3
-1.8
3
42.9
43.9
Minor BPS
56.2
0.17
1.9
71.2
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019719
Chromosome:
PEDO01012260.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021166
149881 - 166449
16569