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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012260.1_172009_172627_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
172009 - 172627
Intron Length:
619

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAT|GCACCCGGA
5'SS Class:
weak_major
3'SS Sequence:
CCTAACGACCCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
TCCTTCTTAGAT
Flanking Amino Acid:
ITAEADSGTL
Intron Amino Acid Position:
1

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.9
0.09
1.4
50.6
43
Major BPS
72
0.55
1
71.8
31.4
Major PPT
56.8
0.15
1
46.4
40.2
Minor 5ss
32.3
-2
4.5
49.5
47.4
Minor BPS
57.7
0.32
1.7
72.39
44.6

Associated Gene:

Gene:
SLC27A1
Ensembl Gene ID:
ENSAPLG00000011847
Chromosome:
PEDO01012260.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012390
172007 - 177314
5308