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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012260.1_172776_174004_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
172776 - 174004
Intron Length:
1229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGGGCT
5'SS Class:
major
3'SS Sequence:
TTTGCTGCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTGAA
U12 Branch Point Sequence:
GAAGCCTAAGCT
Flanking Amino Acid:
WDDCTKYRCTIIQYIGEICR
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
66.9
38.5
Major BPS
60.8
0.27
1
51.3
35.5
Major PPT
80.4
0.68
0.9
77.5
36.9
Minor 5ss
26.9
-2.7
3.5
39.6
45.9
Minor BPS
47.2
-0.1
2
62.94
46.5

Associated Gene:

Gene:
SLC27A1
Ensembl Gene ID:
ENSAPLG00000011847
Chromosome:
PEDO01012260.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012390
172007 - 177314
5308