About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012260.1_179933_180492_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
179933 - 180492
Intron Length:
560

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCGGGG
5'SS Class:
major
3'SS Sequence:
GCCTTTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTAAC
U12 Branch Point Sequence:
TGTGACCTAACT
Flanking Amino Acid:
AADYAAKLREAFRGASMPVF
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.7
0.32
1.3
49.8
46.9
Major BPS
63.2
0.33
1
63.6
30.5
Major PPT
80.5
0.69
0.8
76.2
32.4
Minor 5ss
33.1
-1.9
3.7
46.9
48.5
Minor BPS
56
0.27
2
78.85
42.7

Associated Gene:

Gene:
PGLS
Ensembl Gene ID:
ENSAPLG00000011844
Chromosome:
PEDO01012260.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012317
179479 - 181497
2019