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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012260.1_180595_181002_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
180595 - 181002
Intron Length:
408

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTCG
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTCTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
GCCTTTTTAATG
Flanking Amino Acid:
SLFPDHPLLKEEEKIVAAIT
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.4
39.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
75.9
0.58
1
69.7
41.5
Minor 5ss
38.7
-1.3
2.9
47.6
48
Minor BPS
59
0.14
1.4
54.54
41.8

Associated Gene:

Gene:
PGLS
Ensembl Gene ID:
ENSAPLG00000011844
Chromosome:
PEDO01012260.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012317
179479 - 181497
2019