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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012260.1_182802_183455_F

Intron Information:

Intron Rank:
140191
Intron Class:
major
Intron Phase:
Intron Coordinates:
182802 - 183455
Intron Length:
654

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCTCTG
5'SS Class:
major
3'SS Sequence:
TTTATTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTATTTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.2
63.6
48.1
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
92.4
0.95
0.7
87.7
29.7
Minor 5ss
42
-0.9
3.2
58.1
46.5
Minor BPS
62.2
0.38
1.6
75.3
35.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025398
Chromosome:
PEDO01012260.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036289
182335 - 184254
1920