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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012260.1_183237_183455_F

Intron Information:

Intron Rank:
140188
Intron Class:
major
Intron Phase:
Intron Coordinates:
183237 - 183455
Intron Length:
219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACGTG
5'SS Class:
major
3'SS Sequence:
TTTATTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTATTTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69.5
41.5
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
92.4
0.95
0.7
87.7
29.7
Minor 5ss
39.3
-1.2
3.5
55
49.2
Minor BPS
62.2
0.38
1.6
75.3
35.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025398
Chromosome:
PEDO01012260.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035860
183151 - 184254
1104
ENSAPLT00000021830
183151 - 184267
1117