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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012260.1_21781_21889_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21781 - 21889
Intron Length:
109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGGGGC
5'SS Class:
major
3'SS Sequence:
CCGTTCCCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTCAC
U12 Branch Point Sequence:
TGTGCCTCACTG
Flanking Amino Acid:
TRWDKIVLKKWYTIFKDHVT
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
60.2
38.7
Major BPS
54.7
0.12
1.2
59.2
39.1
Major PPT
75.9
0.58
0.8
68.8
31.8
Minor 5ss
24.3
-3
3.3
28.8
38.7
Minor BPS
47.6
-0.3
2
56.06
45.6

Associated Gene:

Gene:
UBL5
Ensembl Gene ID:
ENSAPLG00000014340
Chromosome:
PEDO01012260.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014933
21175 - 22397
1223