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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012260.1_22985_23187_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22985 - 23187
Intron Length:
203

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGCCG
5'SS Class:
major
3'SS Sequence:
GTCCCCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCGTGAC
U12 Branch Point Sequence:
CCCTCCGTGACT
Flanking Amino Acid:
LPLRDRLRAARVCRRWRRLV
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
54
44.7
Major BPS
48.6
-0
1.2
40.4
40
Major PPT
73.3
0.52
0.8
65.8
30.2
Minor 5ss
24.2
-3
3.2
29.7
43.3
Minor BPS
54.2
0.21
2.1
70.4
47

Associated Gene:

Gene:
FBXL12
Ensembl Gene ID:
ENSAPLG00000021099
Chromosome:
PEDO01012260.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047933
21936 - 24474
2539