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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012260.1_23261_23700_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23261 - 23700
Intron Length:
440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGCTTC
5'SS Class:
major
3'SS Sequence:
ATTCTCCCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATTATTATTC
Flanking Amino Acid:
WADVDLSPHKLSSKTLWQLV
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
69.2
38.5
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
75.7
0.58
0.8
66.8
34.9
Minor 5ss
41.6
-0.9
3.3
57.8
47.2
Minor BPS
53.5
0.09
1.8
67.92
37.7

Associated Gene:

Gene:
FBXL12
Ensembl Gene ID:
ENSAPLG00000021099
Chromosome:
PEDO01012260.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047933
21936 - 24474
2539